Acta Academiae Medicinae Sinica ›› 2017, Vol. 39 ›› Issue (5): 629-636.doi: 10.3881/j.issn.1000-503X.2017.05.006
• Orginal Article • Previous Articles Next Articles
Jun MA1, Aihua ZHU1, Jinwei SHI1, Ming JIN1, Huajie BA1, Zhiguang PING2()
Received:
2016-07-14
Online:
2017-10-30
Published:
2017-10-30
CLC Number:
Jun MA, Aihua ZHU, Jinwei SHI, Ming JIN, Huajie BA, Zhiguang PING. Polymorphisms of 23 Y-chromosome STR Loci in A Han Population in Jiangsu Province[J].Acta Academiae Medicinae Sinica, 2017, 39(5): 629-636.
Table 1
Allele frequencies and gene diversities of 22 Y-STR loci in a Han population in Jiangsu province(n=4281)"
等位基因 Allele | DYS19 | DYS389Ⅰ | DYS389Ⅱ | DYS390 | DYS391 | DYS392 | DYS393 | DYS438 | DYS439 | DYS437 | DYS448 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6 | 0.0031 | ||||||||||||||||||||
7 | 0.0002 | 0.0004 | 0.0006 | ||||||||||||||||||
8 | 0.0008 | 0.0002 | 0.0035 | 0.0006 | |||||||||||||||||
9 | 0.0378 | 0.0002 | 0.0124 | 0.0012 | |||||||||||||||||
10 | 0.7413 | 0.0097 | 0.0002 | 0.7812 | 0.0479 | ||||||||||||||||
11 | 0.0118 | 0.2099 | 0.1037 | 0.0041 | 0.1738 | 0.4348 | |||||||||||||||
12 | 0.0027 | 0.5907 | 0.0068 | 0.1682 | 0.5038 | 0.0263 | 0.3798 | ||||||||||||||
13 | 0.0417 | 0.2392 | 0.3323 | 0.3130 | 0.0019 | 0.1166 | 0.0131 | ||||||||||||||
14 | 0.1888 | 0.1527 | 0.3379 | 0.1259 | 0.0002 | 0.0180 | 0.6227 | ||||||||||||||
15 | 0.4931 | 0.0054 | 0.0440 | 0.0508 | 0.0010 | 0.3427 | 0.0006 | ||||||||||||||
16 | 0.1929 | 0.0002 | 0.0033 | 0.0019 | 0.0216 | 0.0023 | |||||||||||||||
17 | 0.0792 | 0.0002 | 0.0002 | 0.0145 | |||||||||||||||||
18 | 0.0017 | 0.2580 | |||||||||||||||||||
19 | 0.3595 | ||||||||||||||||||||
20 | 0.0004 | 0.2512 | |||||||||||||||||||
21 | 0.0046 | 0.1016 | |||||||||||||||||||
22 | 0.0502 | 0.0110 | |||||||||||||||||||
23 | 0.4901 | 0.0012 | |||||||||||||||||||
24 | 0.0012 | 0.2732 | |||||||||||||||||||
25 | 0.0010 | 0.1639 | |||||||||||||||||||
26 | 0.0091 | 0.0156 | |||||||||||||||||||
27 | 0.1010 | 0.0017 | |||||||||||||||||||
28 | 0.3201 | 0.0002 | |||||||||||||||||||
29 | 0.2929 | ||||||||||||||||||||
30 | 0.1971 | ||||||||||||||||||||
31 | 0.0651 | ||||||||||||||||||||
32 | 0.0106 | ||||||||||||||||||||
33 | 0.0019 | ||||||||||||||||||||
GD | 0.7887 | 0.6844 | 0.8426 | 0.7283 | 0.4724 | 0.8159 | 0.7197 | 0.4099 | 0.7435 | 0.6589 | 0.8217 | ||||||||||
等位基因 Allele | DYS456 | DYS458 | DYS635 | DY_GATA_H4 | DYS481 | DYS533 | DYS549 | DYS570 | DYS576 | DYS643 | |||||||||||
6 | |||||||||||||||||||||
7 | 0.0002 | ||||||||||||||||||||
8 | 0.0002 | 0.0276 | |||||||||||||||||||
9 | 0.0008 | 0.0010 | 0.0006 | 0.0844 | |||||||||||||||||
10 | 0.0434 | 0.0560 | 0.0029 | 0.2294 | |||||||||||||||||
11 | 0.3107 | 0.6169 | 0.0699 | 0.0004 | 0.5175 | ||||||||||||||||
12 | 0.0004 | 0.0006 | 0.5623 | 0.2728 | 0.5482 | 0.1230 | |||||||||||||||
13 | 0.0210 | 0.0054 | 0.0780 | 0.0400 | 0.3101 | 0.0004 | 0.0004 | 0.0172 | |||||||||||||
14 | 0.1813 | 0.0201 | 0.0048 | 0.0129 | 0.0599 | 0.0139 | 0.0120 | 0.0006 | |||||||||||||
15 | 0.4841 | 0.1908 | 0.0002 | 0.0079 | 0.0299 | 0.0120 | |||||||||||||||
16 | 0.1815 | 0.1811 | 0.0004 | 0.1528 | 0.0765 | ||||||||||||||||
17 | 0.1064 | 0.2292 | 0.0006 | 0.2168 | 0.2132 | ||||||||||||||||
18 | 0.0224 | 0.2072 | 0.0019 | 0.0004 | 0.2753 | 0.3093 | |||||||||||||||
19 | 0.0027 | 0.1056 | 0.1684 | 0.0029 | 0.1906 | 0.2381 | |||||||||||||||
20 | 0.0002 | 0.0446 | 0.2419 | 0.0075 | 0.0832 | 0.1064 | |||||||||||||||
21 | 0.0124 | 0.3203 | 0.0550 | 0.0268 | 0.0270 | ||||||||||||||||
22 | 0.0027 | 0.1477 | 0.1576 | 0.0089 | 0.0035 | ||||||||||||||||
23 | 0.0002 | 0.0809 | 0.2437 | 0.0008 | 0.0010 | ||||||||||||||||
24 | 0.0322 | 0.2576 | 0.0002 | 0.0004 | |||||||||||||||||
25 | 0.0052 | 0.1726 | |||||||||||||||||||
26 | 0.0010 | 0.0701 | |||||||||||||||||||
27 | 0.0189 | ||||||||||||||||||||
28 | 0.0095 | ||||||||||||||||||||
29 | 0.0025 | ||||||||||||||||||||
30 | 0.0012 | ||||||||||||||||||||
31 | 0.0004 | ||||||||||||||||||||
32 | |||||||||||||||||||||
33 | |||||||||||||||||||||
GD | 0.7735 | 0.8963 | 0.8679 | 0.6951 | 0.8735 | 0.6173 | 0.6797 | 0.8761 | 0.8552 | 0.7500 |
Table 2
Allele frequencies and gene diversities of DYS385a/b locus in a Han population in Jiangsu province(n=4281)"
位点 Locus | 基因型 Genotypes | 基因频率 Frequency | 基因型 Genotypes | 基因频率 Frequency | 基因型 Genotypes | 基因频率 Frequency | 基因型 Genotypes | 基因频率 Frequency |
---|---|---|---|---|---|---|---|---|
DYS385a/b | 9/11 | 0.0002 | 11/19 | 0.0226 | 13/20 | 0.0282 | 15/22 | 0.0044 |
9/12 | 0.0006 | 11/20 | 0.0089 | 13/21 | 0.0158 | 15/23 | 0.0023 | |
9/15 | 0.0002 | 11/21 | 0.0023 | 13/22 | 0.0050 | 15/24 | 0.0002 | |
9/18 | 0.0002 | 11/22 | 0.0004 | 13/23 | 0.0015 | 16 | 0.0029 | |
10 | 0.0006 | 12 | 0.0342 | 13/24 | 0.0010 | 16/17 | 0.0008 | |
10/11 | 0.0012 | 12/13 | 0.0392 | 13/25 | 0.0010 | 16/18 | 0.0008 | |
10/12 | 0.0019 | 12/14 | 0.0079 | 13/26 | 0.0002 | 16/19 | 0.0017 | |
10/13 | 0.0012 | 12/15 | 0.0085 | 14 | 0.0058 | 16/20 | 0.0017 | |
10/14 | 0.0004 | 12/16 | 0.0591 | 14/15 | 0.0025 | 16/21 | 0.0010 | |
10/16 | 0.0008 | 12/17 | 0.0587 | 14/16 | 0.0029 | 16/22 | 0.0008 | |
10/17 | 0.0019 | 12/18 | 0.0467 | 14/17 | 0.0137 | 16/23 | 0.0004 | |
10/18 | 0.0027 | 12/19 | 0.0510 | 14/18 | 0.0284 | 17 | 0.0002 | |
10/19 | 0.0021 | 12/20 | 0.0280 | 14/19 | 0.0162 | 17/18 | 0.0006 | |
10/20 | 0.0012 | 12/21 | 0.0089 | 14/20 | 0.0056 | 17/19 | 0.0002 | |
10/21 | 0.0002 | 12/22 | 0.0027 | 14/21 | 0.0023 | 17/20 | 0.0006 | |
10/22 | 0.0006 | 12/23 | 0.0023 | 14/22 | 0.0019 | 17/21 | 0.0008 | |
11 | 0.0141 | 12/24 | 0.0002 | 14/23 | 0.0006 | 18 | 0.0010 | |
11/12 | 0.0378 | 13 | 0.1104 | 14/26 | 0.0002 | 18/19 | 0.0004 | |
11/13 | 0.0114 | 13/14 | 0.0303 | 15/16 | 0.0056 | 18/20 | 0.0004 | |
11/14 | 0.0046 | 13/15 | 0.0048 | 15/17 | 0.0058 | 19 | 0.0002 | |
11/15 | 0.0029 | 13/16 | 0.0122 | 15/18 | 0.0048 | 19/20 | 0.0010 | |
11/16 | 0.0133 | 13/17 | 0.0266 | 15/19 | 0.0048 | 19/21 | 0.0002 | |
11/17 | 0.0214 | 13/18 | 0.0398 | 15/20 | 0.0050 | 20 | 0.0004 | |
11/18 | 0.0315 | 13/19 | 0.0535 | 15/21 | 0.0056 | 21 | 0.0002 | |
GD | 0.9696 |
Table 4
Comparisons of gene diversities of 17 Y-STR loci between Jiangsu Han and other populations"
基因座 Locus | 江苏汉族Jiangsu Han | 苏北汉族North of Jiangsu Han | 河南汉族Henan Han | 陕西汉族Shaanxi Han | 内蒙汉族Inner Mongolia Han |
---|---|---|---|---|---|
DYS19 | 0.7887 | 0.8371 | 0.7115 | 0.7131 | 0.7361 |
DYS389Ⅰ | 0.6844 | 0.7113 | 0.6087 | 0.6389 | 0.6608 |
DYS389Ⅱ | 0.8426 | 0.8797 | 0.7653 | 0.7511 | 0.7590 |
DYS390 | 0.7283 | 0.7911 | 0.6806 | 0.7059 | 0.7227 |
DYS391 | 0.4724 | 0.4593 | 0.4127 | 0.4130 | 0.4017 |
DYS392 | 0.8159 | 0.8686 | 0.7433 | 0.7743 | 0.7826 |
DYS393 | 0.7197 | 0.7110 | 0.6309 | 0.6178 | 0.6421 |
DYS438 | 0.4099 | 0.4117 | 0.4971 | 0.5063 | 0.5569 |
DYS439 | 0.7435 | 0.8260 | 0.6886 | 0.6830 | 0.6974 |
DYS437 | 0.6589 | 0.6809 | 0.4730 | 0.5157 | 0.4838 |
DYS448 | 0.8217 | 0.8713 | 0.7288 | 0.7053 | 0.7267 |
DYS456 | 0.7735 | 0.7634 | 0.6671 | 0.6097 | 0.6531 |
DYS458 | 0.8963 | 0.9089 | 0.8018 | 0.8132 | 0.8907 |
DYS635 | 0.8679 | 0.8675 | 0.7980 | 0.7651 | 0.7716 |
DY_GATA_H4 | 0.6951 | 0.6763 | 0.6164 | 0.6282 | 0.6559 |
DYS385a/b | 0.9696 | 0.9762 | 0.9647 | 0.9734 | 0.9345 |
基因座 Locus | 湖北汉族Hubei Han | 云南汉族Yunnan Han | 广东汉族Guangdong Han | 新疆维族Xinjiang Han | 蒙古族Mongolian |
DYS19 | 0.6653 | 0.6570 | 0.6858 | 0.7407 | 0.7153 |
DYS389Ⅰ | 0.5941 | 0.6490 | 0.6130 | 0.5997 | 0.6590 |
DYS389Ⅱ | 0.7316 | 0.7600 | 0.7658 | 0.7655 | 0.7271 |
DYS390 | 0.6937 | 0.6680 | 0.7229 | 0.7445 | 0.6772 |
DYS391 | 0.4057 | 0.4550 | 0.4285 | 0.4786 | 0.4326 |
DYS392 | 0.7257 | 0.7490 | 0.7143 | 0.6028 | 0.7858 |
DYS393 | 0.6408 | 0.6850 | 0.6680 | 0.6021 | 0.6520 |
DYS438 | 0.3838 | 0.3990 | 0.4855 | 0.6819 | 0.5095 |
DYS439 | 0.6498 | 0.7320 | 0.6633 | 0.7334 | 0.7215 |
DYS437 | 0.4623 | 0.3900 | 0.4829 | 0.5697 | 0.4370 |
DYS448 | 0.6965 | 0.7280 | 0.7392 | 0.6776 | 0.7223 |
DYS456 | 0.6577 | 0.6030 | 0.6013 | 0.6003 | 0.6855 |
DYS458 | 0.8114 | 0.7960 | 0.8169 | 0.8179 | 0.7910 |
DYS635 | 0.7758 | 0.7890 | 0.7852 | 0.7772 | 0.7809 |
DY_GATA_H4 | 0.6244 | 0.6430 | 0.6129 | 0.6859 | 0.6523 |
DYS385a/b | 0.9650 | 0.9630 | 0.9654 | 0.9404 | 0.9296 |
[1] | Hammond HA,Jin L,Zhong Y,et al.Evaluation of 13 short tandem repeat loci for use in personal identification application[J].Am J Hum Genet,1994,55(1):175-189. |
[2] | Fortes-Lima C,Brucato N,Croze M,et al.Genetic population study of Y-chromosome markers in Berlin and Ivory Coast ethnic groups[J].Forensic Sci Int Genet,2015,19:232-237. |
[3] | Gao TZ,Yun LB,Gu Y,et al.Phylogenetic analysis and forensic characteristics of 12 populations using 23 Y-STR loci[J].Forensic Sci Int Genet,2015,19:130-133. |
[4] | Rosser ZH,Zerjal T,Hurles ME,et al.Y-chromosomal diversity in Europe is clinal and influenced primarily by geography,rather than by language[J].Am J Hum Genet,2000,67(6):1526-1543. |
[5] | Walsh PS,Metzger DA,Higuchi R.Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material[J].Biotechniques,1991,10(4):506-513. |
[6] | Nei M.Molecular evolutionary genetics[M]. New York:Columbia University Press,1987. |
[7] | Calderon S,Perez-Benedico D,Mesa L,et al.Phylogenetic and forensic studies of the Southeast Florida Hispanic population using the next-generation forensic PowerPlex Y23 STR marker system[J].Leg Med,2013,15(6):289-292. |
[8] | 翁自立,袁义达,杜若甫. 中国14个民族红细胞血型座位的遗传分化[J].遗传学报,1990,17(4):260-268. |
[9] | Jobling MA,Tyler-smith C. Fathers and sons:the Y chromosome and human evolution[J].Trends Genet,1995,11(11):449-456. |
[10] | Kayser M,Caglia A,Corach D,et al.Evaluation of Y-chromosomal STRS:a multicenter study[J].Int J Legal Med,1997,110(3):125-133. |
[11] | Yang XX,Yang ZH.Y-STR polymorphisms among five Chinese minorities,Mosuo,Mongolian,Naxi,Pumi and Tibetan,in Yunnan Province,PR China[J].Ann Hum Biol,2004,31(1):103-111. |
[12] | Shriver MD,Jin L,Boerwinkle E,et al.A novel measures of genetic distance for highly polymorphic tandem repeat loci[J].Mol Biol Evol,1995,12(5):914-920. |
[13] | 于海龙,储国栋,詹梅. 苏北地区汉族人群19个Y-STR基因座的遗传多态性[J].法医学杂志,2013,29(6):468-469. |
[14] | 刘亚举,李效阳,岳俊涛,等. 河南汉族人群22个Y-STR基因座遗传多态性[J].中国法医学杂志,2013,28(6):502-503. |
[15] | 贺永峰,陈利萍,赵杰,等. 陕西渭南地区汉族人群17个Y-STR基因座多态性及遗传关系分析[J].人类学学报,2014,33(2):230-236. |
[16] | 王永在,王勇,黄太宇,等. 内蒙古汉族人群17个Y-STR基因座遗传多态性[J].中国法医学杂志,2009,24(2):117-118. |
[17] | 朱传红,周翔,邵毅,等. 湖北地区汉族人群24个Y-STR基因座遗传多态性研究[J].刑事技术,2014,39(1):16-22. |
[18] | 聂胜洁,姚金勇,陈碧峰,等. 云南泸西汉族17个Y-STR基因座多态性及遗传关系分析[J].人类学学报,2010,29(2):189-196. |
[19] | 翁玮霞,刘宏,刘超,等. 17个Y-STR基因座在广东汉族人群中的单倍型频率及突变率[J].南方医科大学学报,2013,33(3):412-415. |
[20] | 周卫江,李平. 新疆维吾尔族群体16个Y-STR基因座遗传多态性[J].中国法医学杂志,2011,26(1):61-62. |
[21] | 王永在,郭梦阳,张艳霞,等. 内蒙古蒙古族人群17个Y-STR基因座频率分布及单倍型组成[J].刑事技术,2011,36(3):32-34. |
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